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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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402 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABCB10
ENSSSCG00000010188
ENSG00000135776
ATP binding cassette subfamily B member 10
Low tissue specificity
Detected in all
ABHD17C
ENSSSCG00000001782
ENSG00000136379
Abhydrolase domain containing 17C
Tissue enhanced
Detected in many
large intestine:
39.8
male glands:
50.9
ABO
ENSSSCG00000031532
ENSG00000148288
Histo-blood group ABO system transferase
Low tissue specificity
Detected in all
AGFG2
ENSSSCG00000007664
ENSG00000106351
ArfGAP with FG repeats 2
Tissue enhanced
Detected in all
esophagus:
39.0
male glands:
37.6
ALDH1A1
ENSSSCG00000028996
ENSG00000165092
Aldehyde dehydrogenase 1 family member A1
Tissue enhanced
Detected in many
lens:
147.3
liver:
94.7
ALDH3B2
ENSSSCG00000026349
ENSG00000132746
Aldehyde dehydrogenase 3 family member B2
Tissue enhanced
Detected in many
mouth:
13.0
skin:
48.0
AMPD3
ENSSSCG00000022492
ENSG00000133805
Adenosine monophosphate deaminase 3
Low tissue specificity
Detected in all
AP1M2
ENSSSCG00000025838
ENSG00000129354
Adaptor related protein complex 1 mu 2 subunit
Tissue enhanced
Detected in many
male glands:
25.6
AP1S3
ENSSSCG00000040847
ENSG00000152056
Adaptor related protein complex 1 sigma 3 subunit
Tissue enhanced
Detected in many
male glands:
31.5
AQP3
ENSSSCG00000040513
ENSG00000165272
Aquaporin-3
Tissue enhanced
Detected in many
kidney:
52.7
mouth:
41.9
upper respiratory system:
73.3
AQP5
ENSSSCG00000000211
ENSG00000161798
Aquaporin-5
Tissue enhanced
Detected in many
cornea:
35.3
male glands:
97.9
salivary gland:
42.2
upper respiratory system:
40.6
ARFIP2
ENSSSCG00000014624
ENSG00000132254
ADP ribosylation factor interacting protein 2
Low tissue specificity
Detected in all
ARHGEF16
ENSSSCG00000024223
ENSG00000130762
Rho guanine nucleotide exchange factor 16
Tissue enhanced
Detected in many
stomach:
83.6
ARHGEF28
ENSSSCG00000028317
ENSG00000214944
Rho guanine nucleotide exchange factor 28
Tissue enhanced
Detected in many
salivary gland:
46.9
ARHGEF37
ENSSSCG00000014436
ENSG00000183111
Rho guanine nucleotide exchange factor 37
Tissue enhanced
Detected in many
lens:
48.8
ARHGEF5
ENSSSCG00000022525
ENSG00000050327
Rho guanine nucleotide exchange factor 5
Tissue enhanced
Detected in many
stomach:
28.9
ARTN
ENSSSCG00000034778
ENSG00000117407
Artemin
Tissue enhanced
Detected in many
ductus deferens:
7.4
male glands:
11.4
penis:
6.9
ASGR2
ENSSSCG00000017932
ENSG00000161944
Asialoglycoprotein receptor 2
Tissue enhanced
Detected in many
liver:
68.8
male glands:
21.1
ATP6V0A4
ENSSSCG00000016516
ENSG00000105929
ATPase H+ transporting V0 subunit a4
Group enriched
Detected in many
kidney:
38.1
salivary gland:
24.9
upper respiratory system:
22.4
AXIN2
ENSSSCG00000017265
ENSG00000168646
Axin 2
Tissue enhanced
Detected in all
cartilage:
55.2
B4GALNT3
ENSSSCG00000033412
ENSG00000139044
Beta-1,4-N-acetyl-galactosaminyltransferase 3
Tissue enhanced
Detected in many
cartilage:
48.3
male glands:
38.6
vagus nerve:
27.0
BAIAP2L1
ENSSSCG00000007602
ENSG00000006453
BAI1 associated protein 2 like 1
Tissue enhanced
Detected in many
large intestine:
36.2
stomach:
45.9
BDH1
ENSSSCG00000024109
ENSG00000161267
3-hydroxybutyrate dehydrogenase 1
Tissue enhanced
Detected in all
large intestine:
45.8
liver:
81.6
BEST2
ENSSSCG00000013733
ENSG00000039987
Bestrophin 2
Tissue enhanced
Detected in many
breast:
10.9
BHLHA15
ENSSSCG00000038489
ENSG00000180535
Basic helix-loop-helix family member a15
Tissue enhanced
Detected in many
male glands:
59.2
salivary gland:
80.4
upper respiratory system:
37.6
BICDL2
ENSSSCG00000020895
ENSG00000162069
BICD family like cargo adaptor 2
Low tissue specificity
Detected in all
BSPRY
ENSSSCG00000021173
ENSG00000119411
B-box and SPRY domain containing
Tissue enhanced
Detected in many
large intestine:
20.8
testis:
29.4
C11orf52
ENSSSCG00000015035
ENSG00000149300
Chromosome 11 open reading frame 52
Low tissue specificity
Detected in all
C1orf116
ENSSSCG00000032446
ENSG00000182795
Chromosome 1 open reading frame 116
Tissue enhanced
Detected in many
kidney:
35.4
mouth:
34.5
C1orf210
ENSSSCG00000003951
ENSG00000253313
Chromosome 1 open reading frame 210
Tissue enhanced
Detected in many
kidney:
64.1
liver:
43.8
stomach:
40.6
C2CD2
ENSSSCG00000025821
ENSG00000157617
C2 calcium dependent domain containing 2
Tissue enhanced
Detected in all
retina:
48.7
C4orf19
ENSSSCG00000008771
ENSG00000154274
Chromosome 4 open reading frame 19
Tissue enhanced
Detected in all
liver:
34.1
stomach:
39.0
C6orf132
ENSSSCG00000036801
ENSG00000188112
Chromosome 6 open reading frame 132
Tissue enhanced
Detected in many
cornea:
85.0
mouth:
39.1
stomach:
38.1
C9orf152
ENSSSCG00000005452
ENSG00000188959
Chromosome 9 open reading frame 152
Tissue enhanced
Detected in many
male glands:
28.7
CA12
ENSSSCG00000004565
ENSG00000074410
Carbonic anhydrase 12
Tissue enhanced
Detected in many
kidney:
102.2
large intestine:
56.6
male glands:
36.5
CAMSAP3
ENSSSCG00000013583
ENSG00000076826
Calmodulin regulated spectrin associated protein family member 3
Tissue enhanced
Detected in many
stomach:
45.4
CAPN5
ENSSSCG00000014875
ENSG00000149260
Calpain 5
Tissue enhanced
Detected in all
large intestine:
39.9
stomach:
89.9
CAPN8
ENSSSCG00000034746
ENSG00000203697
Calpain 8
Tissue enriched
Detected in many
stomach:
105.0
CARD14
ENSSSCG00000017154
ENSG00000141527
Caspase recruitment domain family member 14
Tissue enhanced
Detected in some
male glands:
33.3
salivary gland:
28.2
skin:
24.6
CASP10
ENSSSCG00000026940
ENSG00000003400
Caspase-10
Low tissue specificity
Detected in all
CASP6
ENSSSCG00000009140
ENSG00000138794
Caspase 6
Low tissue specificity
Detected in all
CBLC
ENSSSCG00000003083
ENSG00000142273
Cbl proto-oncogene C
Low tissue specificity
Detected in all
CBR2
ENSSSCG00000031851
Carbonyl reductase
Group enriched
Detected in many
liver:
177.7
lung:
292.2
upper respiratory system:
105.0
CCDC120
ENSSSCG00000012288
ENSG00000147144
Coiled-coil domain containing 120
Tissue enhanced
Detected in many
stomach:
48.1
CCDC192
ENSSSCG00000034496
ENSG00000230561
Coiled-coil domain containing 192
Tissue enhanced
Detected in some
choroid plexus:
13.7
male glands:
7.2
salivary gland:
14.8
CCDC85C
ENSSSCG00000037284
ENSG00000205476
Coiled-coil domain containing 85C
Tissue enhanced
Detected in all
lens:
33.8
CDC42BPG
ENSSSCG00000013018
ENSG00000171219
CDC42 binding protein kinase gamma
Low tissue specificity
Detected in many
CDCP1
ENSSSCG00000011298
ENSG00000163814
CUB domain containing protein 1
Low tissue specificity
Detected in many
CDH1
ENSSSCG00000025652
ENSG00000039068
Cadherin-1 precursor
Tissue enhanced
Detected in many
male glands:
78.6
CDH3
ENSSSCG00000023162
ENSG00000062038
Cadherin 3
Tissue enhanced
Detected in many
choroid plexus:
29.6
kidney:
32.5
thyroid gland:
48.9
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